Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs17490973 chr3:111601158 A/G 3.32E-9 503 25.02 24.62 31.9 KM Plot
THCA rs17491120 chr3:111609912 A/C 5.48E-9 503 25.02 28 31.8 KM Plot
THCA rs17524101 chr2:238395813 C/T 0 497 31.4 33.97 39.2 KM Plot
THCA rs17577295 chr13:44145370 G/C 9.1E-5 495 31.77 27.92 43.45 KM Plot
THCA rs17586183 chr14:52027776 A/G 9.13E-5 500 31.47 31.72 25.47 KM Plot
THCA rs1758653 chr10:7884983 A/G 0.000133 503 25.4 32.87 31.47 KM Plot
THCA rs1758654 chr10:7884560 A/G 0.000132 503 25.4 32.65 31.47 KM Plot
THCA rs1758655 chr10:7884332 T/C 0.000149 502 31.47 33.07 19.1 KM Plot
THCA rs17654740 chr7:43985818 A/G 2.25E-8 501 31.27 33.52 32.37 KM Plot
THCA rs17680493 chr1:152972747 G/A 0.000141 501 31.53 32.37 37.7 KM Plot
THCA rs1769686 chr10:90414652 C/G 2.73E-5 498 32.9 31.3 27.02 KM Plot
THCA rs17710744 chr10:110971128 C/T 0.000133 502 31.47 32.13 32.1 KM Plot
THCA rs17711128 chr7:43985797 A/C 2.25E-8 501 31.27 33.52 32.37 KM Plot
THCA rs17727044 chr10:104821256 A/T 9.28E-14 501 31.37 35.33 32.1 KM Plot
THCA rs17727391 chr10:104836101 C/A 6.92E-14 503 31.27 35.33 32.1 KM Plot